Edited
Book
Translated
book
Journal Papers
- K. Zhao and X.-W. Chu, “G-BLASTN: Accelerating Nucleotide
Alignment by Graphics Processors,” Bioinformatics, to appear. [G-BLASTN]
- Q. Li, C. Zhong, K. Li, G. Zhang, X. Lu, Q. Zhang, K. Zhao
and X.-W. Chu, “A Parallel Lattice Boltzmann Method for Large Eddy
Simulation on Multiple GPUs,” Springer Computing, to appear. [PDF]
- X. Mei, L. Yung, K. Zhao, and X.-W. Chu, “A Measurement Study of
GPU DVFS on Energy Conservation,” USENIX HotPower’13, co-located with the
24th ACM Symposium on Operating Systems Principles (SOSP), Pennsylvania,
USA, November 2013. [PDF]
- Y. Li, K. Zhao, X.-W. Chu, and Jiming Liu, “Speeding up
K-Means Algorithm by GPUs,” Journal
of Computer and System Science, Vol. 79,
No. 2, pages 216-229, March 2013. [PDF]
- C.-M. Liu, T. Wong, E. Wu, R. Luo, S.-M. Yiu, Y. Li, B. Wang, C.
Yu, X.-W. Chu, K. Zhao, R. Li, T.-W. Lam, “SOAP3: Ultra-fast GPU-based
parallel alignment tool for short reads,” Applications Note, Bioinformatics, January 2012. [PDF] [SOAP3]
- X.-W. Chu, K. Zhao, and Z. Li, “Tsunami: Massively
Parallel Homomorphic Hashing on Many-core GPUs,” Concurrency
and Computation: Practice & Experience, Vol. 24, No. 7, pages 2028-2039, Dec 2012. (online). [PDF]
- Beini Jiang, Allan Struthers, Zhe Sun, Zhuo Feng, Xuqian Zhao,
Kaiyong Zhao, Weizhong Dai, Xiaobo Zhou, Michael E. Berens, Le Zhang,
“Employing graphics processing unit technology, alternating direction
implicit method and domain decomposition to speed up the numerical
diffusion solver for the biomedical engineering research”, Article first
published online: 2 MAY 2011.
- X.-W. Chu, X. Chen, K. Zhao, and J. Liu, “Reputation and Trust
Management in Heterogeneous Peer-to-Peer Network,”Springer Journal of
Telecommunication Systems, Vol. 44, No. 3-4, pages 191-203, Jan 2010.
- X.-W. Chu, K. Zhao, and M. Wang, “Accelerating Network Coding on
Many-core GPUs and Multi-core CPUs,” Journal of
Communications, Special Issue on
Network Coding and Applications, Vol 4, No 11 (2009), pages
902-909, Dec 2009.[OPEN ACCESS]
- X.-W. Chu, K. Zhao, Z. Li, and A. Mahanti, “Auction Based
On-Demand P2P Media Streaming with Minimum Cost,” IEEE Transactions
on Parallel and Distributed Systems, Vol. 20, No. 12, pages 1816-1829, Dec
2009.
Conference Papers
- K. Zhao and X.-W. Chu, “GPU-BLASTN: Accelerating Nucleotide
Sequence Alignment by GPUs,” Poster, RECOMB 2013, Beijing, China. [PDF]
- Q. Li, C. Zhong, K. Li, G. Zhang, X. Lu, Q. Zhang, K. Zhao
and X.-W. Chu, “Implementation of a Lattice Boltzmann Method for Large
Eddy Simulation on Multiple GPUs,” The third International Workshop
on Frontier of GPU Computing,
Liverpool, UK, June 2012. [PDF]
- Q. Li, C. Zhong, K. Zhao, X. Mei and X.-W. Chu,
“Implementation and Analysis of AES Encryption on GPU,” The third
International Workshop on Frontier of GPU Computing, Liverpool, UK, June
2012. [PDF]
- Y. Li, K. Zhao, X.-W. Chu, and Jiming Liu, “Speeding up K-Means
Algorithm by GPUs,” IEEE CIT 2010, July 2010, Bradford, UK. (Best
Paper Award. Acceptance rate = 20%)
- K. Zhao and X.-W. Chu, “GPUMP: a Multiple-Precision Integer
Library for GPUs,” the 1st International Workshop on Frontier of GPU
Computing, Bradford, UK, June-July 2010.
- K.-Y Zhao, Shifu Chen, Y.-B Zhang, Y.-L Chu, Photo Editing on the
GPU with MuseMage, GTC 2010, CA, USA
- K. –Y Zhao, X.W. Chu, M. Wang, and Y. Jiang, "Speeding Up
Homomorphic Hashing Using GPUs", in Proceedings of IEEE ICC 2009.
- X.-W. Chu, K. -Y Zhao, and M. Wang, “Practical Random Linear
Network Coding on GPUs”, IFIP
Networking’09, Archen, Germany, May 2009.
- X.-W. Chu, K.-Y Zhao, and M. Wang, “Massively Parallel Network
Coding on GPUs,” IEEE IPCCC’08, Dec 2008.
- X. Chen, K.-Y Zhao, and X.-W. Chu, “SepRep: A Novel Reputation
Evaluation Model in Peer-to-Peer Networks,” ATC 2008: 86-99, Oslo, Norway,
June 2008.
Chinese
- 张广勇,卢晓伟,沈铂,张凯,储琪,赵开勇,"基于GPU平台的联合迭代重构算法加速",<计算机科学>,2012, 39(5)
- 张清 谢海波 赵开勇 吴庆 陈维 王狮虎 迟旭光 褚晓文,一种使用GPU加速地震叠前时间偏移的方法,《微型机与应用》2011年 第10期,87-90,2011.1
- 张清 迟旭光 谢海波 赵开勇 吴庆 陈维 王狮虎 褚晓文, 基于GPU实现叠前时间偏移走时计算的并行算法,《计算机系统应用》,2011年,20卷8期, 42-46, 2011.8
- 张广勇,卢晓伟,沈铂,储琪,张凯,谢海波,赵开勇,何立强,褚晓文,张法,孙飞, “基于GPU平台的联合迭代重构算法加速”,HPC China
2011 会议论文集,2011.10.26-29
- 储琪 张凯 万晓华 张茨 张艳 张广勇 沈铂 卢晓伟 赵开勇 褚晓文 张法 孙飞, ATOM 1.0:基于 GPU的电子断层重构软件,《生物物理学报》,2011年 第3期 ,231-241, 2011.3
- 万宁 谢海波 张清 赵开勇 褚晓文 于军, 使用GPU加速BLAST算法初探,《计算机工程与科学》2009年11期 98-101 2009.11
Presentations
- Chang’an University,
Xian, Shanxi, China, June, 19, 2010.
- Dalian University
of Technology, Dalian, Liaoning, China, May, 2010
- GPU-based parallel
computing and the CUDA programming, Supercomputing Center, China,
March,31-April, 2, 2010
- Guangdong Province
Computer Society 25th Anniversary & Cum 2009
Provincial Computer Society Annual Conference(广东省计算机学会成立25周年暨2009年学术年会),
December, 18, 2009
- ShanDong University, Shandong, China, November, 7, 2009
- China
Grid 2009, Yantai,
Shandong, China, August 21-22, 2009
- University of Science and
Technology of China, Hefei, China, April, 27, 2009
- HeFei University of Technology, Hefei, China, April, 25, 2009
- Wuhan University, Wuhan, China, April, 21, 2009
- Huazhong University of Science & Technology (HUST), Wuhan,
China, April, 23, 2009
- University of Electronic Science and Technology of China, Chengdu,
China, April, 11, 2009
- South China University of Technology, Guangzhou, China, March, 28,
2009