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Research Topics
  •       Data mining on GPU
  •       Bioinformatics on GPU
 
Reading Materials
  •       Data mining on GPU

    [1] http://cuda.csdn.net/zxkt/index.html

    [2] A Performance Study of General-Purpose Application on Graphics Processors Using CUDA. S. Che et al, J. Parallel-Distrib. Comput. 2008.PDF

    [3] Parallel Data Mining on Graphics Processors. W. Fang et al. Technical Report HKUST-CS08- 07, Oct 2008.PDF

    [4] Clustering Billions of Data Points Using GPUs. R. Wu et al, HP Laboratories. 2009.PDF

    [5] K-Means on commodity GPUs with CUDA. H. Bai et al, World Congress on Computer Science and Information Engineering. 2009PDF

    [6] Fast Support Vector Machine Training and Classification on Graphics Processors. B. Catanzaro, et al. Technical Report No. UCB/EECS-2008-11.PDF

    [7] Frequent Itemset Mining on Graphics Processors. Fang et al. Proceedings of the Fifth International Workshop on Data Management on New hardware, 2009.PDF

  
PPT Slides
Data Topic PPT Download
Sep. 11, 2009     Introduction to Protein Identification and Starting learning GPU WR_2009.09.11.ppt
Sep. 18, 2009     Paper Reading: K-means and SVM on GPU WR_2009.09.18.ppt
Sep. 25, 2009     Paper Reading: Frequent itemset mining on GPU WR_2009.09.25.ppt
Oct.  2, 2009     Cancel  
Oct.  9, 2009     Paper Reading: A MapReduce Framework on GPU WR_2009.10.09.ppt
Oct. 16, 2009     Learning Matrix multiplication WR_2009.10.16.ppt
Oct. 23, 2009     Learning Reduction(1) WR_2009.10.23.ppt
Oct. 30, 2009     Learning Reduction(2) && Talk about Protein Identification on GPU WR_2009.10.30.ppt
Nov.  6, 2009     Cancel  
Nov. 11, 2009     Implemetation of K-Means 1 WR_2009.11.13.ppt
Nov. 20, 2009     Implemetation of K-Means 2 WR_2009.11.20.ppt
     
     
     
 
Progress
Data Summary
Report Download
Sep. 11, 2009
  1. Introduce the workflow of protein identification;
  2. Get to know GPU
  3. Learning the basic grammer of CUDA;
  4. Read some papers on k-mean using GPU
WR_2009.09.11.doc
Sep. 18, 2009
  1. Reading papers on k-mean and SVM using GPU;
  2. Listen the on-line CUDA Class(1-4);
WR_2009.09.18.doc
Sep. 25, 2009
  1. Reading papers on Frequent itemset mining using GPU;
  2. Listen the on-line CUDA Class(5-6);
WR_2009.09.25.doc
Oct.  2, 2009     Cancel  
Oct.  9, 2009
  1. Reading papers on MapReduce Framework using GPU;
  2. Data mining homework and TA;
WR_2009.10.09.doc
Oct. 16, 2009
  1. Learning Matrix mulitiplication;
  2. Learning programming with CUDA;
To Do
Oct. 23, 2009
  1. Learning reduction 1;
  2. Learning optimization of CUDA program
To Do
Oct. 30, 2009
  1. Learning reduction 2;
  2. Discuss how to use GPU speed up Protein Identification
To Do
Nov.  6, 2009     Cancel  
Nov.11, 2009
  1. review reduction;
  2. learn an more efficient implementation of Matrix mulitiplicaiton;
  3. review Kaiyong's K-means code;